Do more with LabKey Server. Click here to learn about our Premium Editions.


Web of Microbes
1Synthetic MutualismSuzie Kosina10.1021/acssynbio.5b00236ENIGMA_SK_SyntheticMutualism201510.1021/acssynbio.5b00236Trent NorthenKosina SM, Danielewicz MA, Mohammed M, Ray J, Suh Y, Yilmaz S, et al. Exometabolomics Assisted Design and Validation of Synthetic Obligate Mutualism. ACS Synth Biol. 2016;5:569–76. 2015Kosina
2Biocrust IsolatesRichard Baran10.1038/ncomms9289EarlyCareer_RB_BioSoilCrustCommunity201510.1038/ncomms9289Trent NorthenBaran R, Brodie EL, Mayberry-Lewis J, Hummel E, Da Rocha UN, Chakraborty R, et al. Exometabolite niche partitioning among sympatric soil bacteria. Nat Commun. 2015;6:8289. 2015Baran
3Cyanobacteria UptakeRichard Baran10.1039/c1mb05196bENIGMA_RB_Synechococcus201110.1039/c1mb05196bTrent NorthenBaran R, Bowen BP, Northen TR. Untargeted metabolic footprinting reveals a surprising breadth of metabolite uptake and release by Synechococcus sp. PCC 7002. Mol Biosyst. 2011;7:3200. 2011Baran
4Substrate PreferencesOnur Erbilgin10.1186/s12859-017-1478-2ENIGMA_OE_TricultureModeling201510.1186/s12859-017-1478-2Trent NorthenErbilgin O, Bowen BP, Kosina SM, Jenkins S, Lau RK, Northen TR. Dynamic substrate preferences and predicted metabolic properties of a simple microbial consortium. 2016. 2017Erbilgin
5Web of MicrobesSuzie KosinaWoM manuscript - submittedENIGMA_SK_BEMC201610.1186/s12866-018-1256-yTrent NorthenKosina SM, Greiner A, Lau RK, Jenkins S, Baran R, Bowen BP, Northen TR. Web of Microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes. BMC Microbiology, September 12, 2018https://genome.jgi.doe.gov/portal/ENIBEMetabolites_FD/ENIBEMetabolites_FD.info.html2018Kosina
6Rhizosphere CommunityKateryna Zhalninarhizosphere microbial community assemblyRhizosphereCommunity2018https://doi.org/10.1038/s41564-018-0129-3Trent R. NorthenZhalnina, K., Louie, K.B., Hao, Z., Mansoori, N., da Rocha, U.N., Shi, S., Cho, H., Karaoz, U., Loqué, D., Bowen, B.P., Firestone, M.K., Northen, T.R., Brodie, E.L., 2018. Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly. Nature Microbiology 3, 470–480. doi:10.1038/s41564-018-0129-3https://www.nature.com/articles/s41564-018-0129-3#Sec232018Zhalnina
8ENIGMA AtlasMarkus de Raad ENIGMA AtlasnoneTrent R. Northennonenoneunpublishedde Raad
9Defined MediumMarkus de Raad A Defined Medium for Cultivation and Exometabolite Profiling of Soil Bacteriahttps://doi.org/10.3389/fmicb.2022.855331Trent R. Northennonehttps://genome.jgi.doe.gov/portal/pages/dynamicOrganismDownload.jsf?organism=202Nortabolomics_2_FD2022de Raad
10MCafes_SynComMarkus de RaadMcCafes SynCom NLDM ProfilingMcCafes SynCom NLDM Profiling Trent Northen