project: /wom

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Web of Microbes

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	1	Synthetic Mutualism	Suzie Kosina	10.1021/acssynbio.5b00236	ENIGMA_SK_SyntheticMutualism2015	10.1021/acssynbio.5b00236	Trent Northen	Kosina SM, Danielewicz MA, Mohammed M, Ray J, Suh Y, Yilmaz S, et al. Exometabolomics Assisted Design and Validation of Synthetic Obligate Mutualism. ACS Synth Biol. 2016;5:569–76.		2015	Kosina
	2	Biocrust Isolates	Richard Baran	10.1038/ncomms9289	EarlyCareer_RB_BioSoilCrustCommunity2015	10.1038/ncomms9289	Trent Northen	Baran R, Brodie EL, Mayberry-Lewis J, Hummel E, Da Rocha UN, Chakraborty R, et al. Exometabolite niche partitioning among sympatric soil bacteria. Nat Commun. 2015;6:8289.		2015	Baran
	3	Cyanobacteria Uptake	Richard Baran	10.1039/c1mb05196b	ENIGMA_RB_Synechococcus2011	10.1039/c1mb05196b	Trent Northen	Baran R, Bowen BP, Northen TR. Untargeted metabolic footprinting reveals a surprising breadth of metabolite uptake and release by Synechococcus sp. PCC 7002. Mol Biosyst. 2011;7:3200.		2011	Baran
	4	Substrate Preferences	Onur Erbilgin	10.1186/s12859-017-1478-2	ENIGMA_OE_TricultureModeling2015	10.1186/s12859-017-1478-2	Trent Northen	Erbilgin O, Bowen BP, Kosina SM, Jenkins S, Lau RK, Northen TR. Dynamic substrate preferences and predicted metabolic properties of a simple microbial consortium. 2016.		2017	Erbilgin
	5	Web of Microbes	Suzie Kosina	WoM manuscript - submitted	ENIGMA_SK_BEMC2016	10.1186/s12866-018-1256-y	Trent Northen	Kosina SM, Greiner A, Lau RK, Jenkins S, Baran R, Bowen BP, Northen TR. Web of Microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes. BMC Microbiology, September 12, 2018	https://genome.jgi.doe.gov/portal/ENIBEMetabolites_FD/ENIBEMetabolites_FD.info.html	2018	Kosina
	6	Rhizosphere Community	Kateryna Zhalnina	rhizosphere microbial community assembly	RhizosphereCommunity2018	https://doi.org/10.1038/s41564-018-0129-3	Trent R. Northen	Zhalnina, K., Louie, K.B., Hao, Z., Mansoori, N., da Rocha, U.N., Shi, S., Cho, H., Karaoz, U., Loqué, D., Bowen, B.P., Firestone, M.K., Northen, T.R., Brodie, E.L., 2018. Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly. Nature Microbiology 3, 470–480. doi:10.1038/s41564-018-0129-3	https://www.nature.com/articles/s41564-018-0129-3#Sec23	2018	Zhalnina
	8	ENIGMA Atlas	Markus de Raad		ENIGMA Atlas	none	Trent R. Northen	none	none	unpublished	de Raad
	9	Defined Medium	Markus de Raad		A Defined Medium for Cultivation and Exometabolite Profiling of Soil Bacteria	https://doi.org/10.3389/fmicb.2022.855331	Trent R. Northen	none	https://genome.jgi.doe.gov/portal/pages/dynamicOrganismDownload.jsf?organism=202Nortabolomics_2_FD	2022	de Raad
	10	MCafes_SynCom	Markus de Raad	McCafes SynCom NLDM Profiling	McCafes SynCom NLDM Profiling		Trent Northen